HL_6LSS_080

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGUAA(OMG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_080 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1106

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6LSS|1|2|C|368
6LSS|1|2|G|369
6LSS|1|2|U|370
6LSS|1|2|A|371
6LSS|1|2|A|372
6LSS|1|2|OMG|373

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain D

60S ribosomal protein L4

Chain M

60S ribosomal protein L37

Chain P

60S ribosomal protein L39