HL_6LSS_083

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

6LSS|1|2|C|1365, 6LSS|1|2|G|1366, 6LSS|1|2|C|1367, 6LSS|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|U|1364
6LSS|1|2|C|1365
6LSS|1|2|G|1366
6LSS|1|2|C|1367
6LSS|1|2|A|1368
6LSS|1|2|C|1369
6LSS|1|2|G|1370
6LSS|1|2|A|1371
6LSS|1|2|A|1372
6LSS|1|2|A|1373

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain D

60S ribosomal protein L4

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15

Chain h

60S ribosomal protein L26