HL_6LSS_084

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCGAUGGCCUCCGUUGC

Length

17 nucleotides

Bulged bases

6LSS|1|2|G|2486, 6LSS|1|2|G|2487, 6LSS|1|2|C|2488, 6LSS|1|2|C|2489, 6LSS|1|2|U|2490, 6LSS|1|2|G|2493, 6LSS|1|2|U|2494

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_084 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3328

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LSS|1|2|G|2481
6LSS|1|2|C|2482
6LSS|1|2|G|2483
6LSS|1|2|A|2484
6LSS|1|2|U|2485
6LSS|1|2|G|2486
6LSS|1|2|G|2487
6LSS|1|2|C|2488
6LSS|1|2|C|2489
6LSS|1|2|U|2490
6LSS|1|2|C|2491
6LSS|1|2|C|2492
6LSS|1|2|G|2493
6LSS|1|2|U|2494
6LSS|1|2|U|2495
6LSS|1|2|G|2496
6LSS|1|2|C|2497

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L23a