HL_6LU0_001

3D structure

PDB id

6LU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cas12i2 ternary complex with 12 nt spacer

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UUUCA

Length

5 nucleotides

Bulged bases

6LU0|1|B|U|13, 6LU0|1|B|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LU0_001 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.0876

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6LU0|1|B|U|12
6LU0|1|B|U|13
6LU0|1|B|U|14
6LU0|1|B|C|15
6LU0|1|B|A|16

Current chains

Chain B

crRNA

Nearby chains

Chain A

Cas12i2