HL_6LU8_032

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGCCCGGAGCCCCGCGGACGCUACG

Length

49 nucleotides

Bulged bases

6LU8|1|2|U|2097, 6LU8|1|2|C|2255, 6LU8|1|2|U|2267, 6LU8|1|2|C|2269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LU8|1|2|C|2087
6LU8|1|2|A|2088
6LU8|1|2|G|2089
6LU8|1|2|U|2090
6LU8|1|2|C|2091
6LU8|1|2|G|2092
6LU8|1|2|A|2093
6LU8|1|2|G|2094
6LU8|1|2|A|2095
6LU8|1|2|G|2096
6LU8|1|2|U|2097
6LU8|1|2|G|2098
6LU8|1|2|G|2099
6LU8|1|2|A|2100
6LU8|1|2|C|2101
6LU8|1|2|G|2102
6LU8|1|2|G|2103
6LU8|1|2|G|2104
6LU8|1|2|A|2105
6LU8|1|2|G|2106
6LU8|1|2|C|2107
6LU8|1|2|G|2108
6LU8|1|2|G|2109
6LU8|1|2|C|2110
6LU8|1|2|G|2111
6LU8|1|2|G|2112
6LU8|1|2|C|2113
6LU8|1|2|C|2249
6LU8|1|2|C|2250
6LU8|1|2|G|2251
6LU8|1|2|G|2252
6LU8|1|2|A|2253
6LU8|1|2|G|2254
6LU8|1|2|C|2255
6LU8|1|2|C|2256
6LU8|1|2|C|2257
6LU8|1|2|C|2258
6LU8|1|2|G|2259
6LU8|1|2|C|2260
6LU8|1|2|G|2261
6LU8|1|2|G|2262
6LU8|1|2|A|2263
6LU8|1|2|C|2264
6LU8|1|2|G|2265
6LU8|1|2|C|2266
6LU8|1|2|U|2267
6LU8|1|2|A|2268
6LU8|1|2|C|2269
6LU8|1|2|G|2270

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain l

60S ribosomal protein L28

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7