HL_6LU8_037

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCGAUGGCCUCCGUUGC

Length

17 nucleotides

Bulged bases

6LU8|1|2|C|2489, 6LU8|1|2|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LU8_037 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2179

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6LU8|1|2|G|2481
6LU8|1|2|C|2482
6LU8|1|2|G|2483
6LU8|1|2|A|2484
6LU8|1|2|U|2485
6LU8|1|2|G|2486
6LU8|1|2|G|2487
6LU8|1|2|C|2488
6LU8|1|2|C|2489
6LU8|1|2|U|2490
6LU8|1|2|C|2491
6LU8|1|2|C|2492
6LU8|1|2|G|2493
6LU8|1|2|U|2494
6LU8|1|2|U|2495
6LU8|1|2|G|2496
6LU8|1|2|C|2497

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L23a