HL_6LU8_054

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGUUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LU8_054 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2557

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LU8|1|2|A|3943
6LU8|1|2|G|3944
6LU8|1|2|U|4068
6LU8|1|2|U|4069
6LU8|1|2|U|4070

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36