HL_6LU8_064

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

6LU8|1|2|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LU8_064 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.3607

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6LU8|1|2|A|4473
6LU8|1|2|A|4474
6LU8|1|2|G|4475
6LU8|1|2|C|4476
6LU8|1|2|A|4477
6LU8|1|2|G|4478
6LU8|1|2|A|4479
6LU8|1|2|A|4480
6LU8|1|2|U|4481
6LU8|1|2|U|4482

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain I

60S ribosomal protein L9