HL_6MCC_004

3D structure

PDB id

6MCC (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of AcrIIA2 homolog in complex with CRISPR-Cas9

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MCC_004 not in the Motif Atlas

Homologous match to HL_8KAL_003

Geometric discrepancy: 0.2284

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6MCC|1|B|G|105
6MCC|1|B|A|106
6MCC|1|B|G|107
6MCC|1|B|U|108
6MCC|1|B|C|109

Current chains

Chain B

Single guide RNA (116-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9