HL_6MJ0_002

3D structure

PDB id

6MJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the complete turnip yellow mosaic virus 3'UTR

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAGUUAG

Length

8 nucleotides

Bulged bases (A, C, G, U)

34A, 38A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MJ0_002 not in the Motif Atlas

Homologous match to HL_6MJ0_007

Geometric discrepancy: 0.4041

The information below is about HL_6MJ0_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32617.6

Basepair signature

cWW-F-cSH

Number of instances in this motif group

9

Unit IDs

6MJ0|1|A|C|32
6MJ0|1|A|C|33
6MJ0|1|A|A|34
6MJ0|1|A|G|35
6MJ0|1|A|U|36
6MJ0|1|A|U|37
6MJ0|1|A|A|38
6MJ0|1|A|G|39

Current chains

Chain A

RNA (101-MER)

Nearby chains