HL_6MJ0_003

3D structure

PDB id

6MJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the complete turnip yellow mosaic virus 3'UTR

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MJ0_003 not in the Motif Atlas

Homologous match to HL_6MJ0_008

Geometric discrepancy: 0.2145

The information below is about HL_6MJ0_008

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6MJ0|1|A|C|49
6MJ0|1|A|G|50
6MJ0|1|A|A|51
6MJ0|1|A|A|52
6MJ0|1|A|A|53
6MJ0|1|A|G|54

Current chains

Chain A

RNA (101-MER)

Nearby chains

Chain B

tRNA-like 3' UTR element