HL_6MKN_011
3D structure
- PDB id
- 6MKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- GGAGGAAGAAGCCCUUCGGGGUGUAAACUCC
- Length
- 31 nucleotides
- Bulged bases
- 6MKN|1|A|A|412, 6MKN|1|A|G|413, 6MKN|1|A|A|414, 6MKN|1|A|A|415, 6MKN|1|A|G|416, 6MKN|1|A|U|420, 6MKN|1|A|U|421, 6MKN|1|A|C|422, 6MKN|1|A|C|433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MKN|1|A|G|406
6MKN|1|A|G|407
6MKN|1|A|A|408
6MKN|1|A|G|409
6MKN|1|A|G|410
6MKN|1|A|A|411
6MKN|1|A|A|412
6MKN|1|A|G|413
6MKN|1|A|A|414
6MKN|1|A|A|415
6MKN|1|A|G|416
6MKN|1|A|C|417
6MKN|1|A|C|418
6MKN|1|A|C|419
6MKN|1|A|U|420
6MKN|1|A|U|421
6MKN|1|A|C|422
6MKN|1|A|G|423
6MKN|1|A|G|424
6MKN|1|A|G|425
6MKN|1|A|G|426
6MKN|1|A|U|427
6MKN|1|A|G|428
6MKN|1|A|U|429
6MKN|1|A|A|430
6MKN|1|A|A|431
6MKN|1|A|A|432
6MKN|1|A|C|433
6MKN|1|A|U|434
6MKN|1|A|C|435
6MKN|1|A|C|436
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
Coloring options: