HL_6MKN_012

3D structure

PDB id

6MKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GAAACCCCCGACGAGGGGACUGAC

Length

24 nucleotides

Bulged bases

6MKN|1|A|A|460, 6MKN|1|A|C|461, 6MKN|1|A|G|462, 6MKN|1|A|A|463, 6MKN|1|A|G|474, 6MKN|1|A|G|477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MKN|1|A|G|450
6MKN|1|A|A|451
6MKN|1|A|A|452
6MKN|1|A|A|453
6MKN|1|A|C|454
6MKN|1|A|C|455
6MKN|1|A|C|456
6MKN|1|A|C|457
6MKN|1|A|C|458
6MKN|1|A|G|459
6MKN|1|A|A|460
6MKN|1|A|C|461
6MKN|1|A|G|462
6MKN|1|A|A|463
6MKN|1|A|G|474
6MKN|1|A|G|475
6MKN|1|A|G|476
6MKN|1|A|G|477
6MKN|1|A|A|478
6MKN|1|A|C|479
6MKN|1|A|U|480
6MKN|1|A|G|481
6MKN|1|A|A|482
6MKN|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16