HL_6MPF_018

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

6MPF|1|A|U|822, 6MPF|1|A|U|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MPF_018 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.1526

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6MPF|1|A|G|821
6MPF|1|A|U|822
6MPF|1|A|C|823
6MPF|1|A|U|824
6MPF|1|A|C|825

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2