HL_6MPF_026

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

6MPF|1|A|U|1118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MPF_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.171

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

6MPF|1|A|G|1116
6MPF|1|A|U|1117
6MPF|1|A|U|1118
6MPF|1|A|C|1119
6MPF|1|A|G|1120
6MPF|1|A|G|1121
6MPF|1|A|C|1122

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9