HL_6MPI_001
3D structure
- PDB id
- 6MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 6MPI|1|A|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MPI_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.053
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.1
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6MPI|1|A|U|12
6MPI|1|A|U|13
6MPI|1|A|U|14
6MPI|1|A|G|15
6MPI|1|A|A|16
6MPI|1|A|U|17
6MPI|1|A|C|18
6MPI|1|A|C|19
6MPI|1|A|U|20
6MPI|1|A|G|21
6MPI|1|A|G|22
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S5
- Chain L
- 30S ribosomal protein S12
Coloring options: