HL_6MPI_011

3D structure

PDB id

6MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GAAACCCCCGACGAGGGGACUGAC

Length

24 nucleotides

Bulged bases

6MPI|1|A|A|460, 6MPI|1|A|C|461, 6MPI|1|A|G|462, 6MPI|1|A|A|463, 6MPI|1|A|G|474, 6MPI|1|A|G|477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MPI|1|A|G|450
6MPI|1|A|A|451
6MPI|1|A|A|452
6MPI|1|A|A|453
6MPI|1|A|C|454
6MPI|1|A|C|455
6MPI|1|A|C|456
6MPI|1|A|C|457
6MPI|1|A|C|458
6MPI|1|A|G|459
6MPI|1|A|A|460
6MPI|1|A|C|461
6MPI|1|A|G|462
6MPI|1|A|A|463
6MPI|1|A|G|474
6MPI|1|A|G|475
6MPI|1|A|G|476
6MPI|1|A|G|477
6MPI|1|A|A|478
6MPI|1|A|C|479
6MPI|1|A|U|480
6MPI|1|A|G|481
6MPI|1|A|A|482
6MPI|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16