3D structure

PDB id
6MSF (explore in PDB, NAKB, or RNA 3D Hub)
Description
F6 APTAMER MS2 COAT PROTEIN COMPLEX
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GUCAC
Length
5 nucleotides
Bulged bases
6MSF|1|R|U|7||||P_1, 6MSF|1|R|A|9||||P_1
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38927.6
Basepair signature
cWW-F
Number of instances in this motif group
34

Unit IDs

6MSF|1|R|G|6||||P_1
6MSF|1|R|U|7||||P_1
6MSF|1|R|C|8||||P_1
6MSF|1|R|A|9||||P_1
6MSF|1|R|C|10||||P_1

Current chains

Chain R
RNA (5'-R(*CP*CP*AP*CP*AP*GP*UP*CP*AP*CP*UP*GP*GP*G)-3')

Nearby chains

Chain A
PROTEIN (MS2 PROTEIN CAPSID)
Chain C
PROTEIN (MS2 PROTEIN CAPSID)

Coloring options:

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