HL_6MTB_004

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

6MTB|1|4|G|19, 6MTB|1|4|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_004 not in the Motif Atlas

Homologous match to HL_7MRL_001

Geometric discrepancy: 0.2037

The information below is about HL_7MRL_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6MTB|1|4|C|13
6MTB|1|4|A|14
6MTB|1|4|G|15
6MTB|1|4|C|16
6MTB|1|4|U|18
6MTB|1|4|G|19
6MTB|1|4|U|20
6MTB|1|4|A|21
6MTB|1|4|G|22

Current chains

Chain 4

Z-site tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain u

60S ribosomal protein L10a