HL_6MTB_034

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG(UR3)AAGC

Length

7 nucleotides

Bulged bases

6MTB|1|5|G|1869

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_034 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.1054

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTB|1|5|G|1864
6MTB|1|5|G|1865
6MTB|1|5|UR3|1866
6MTB|1|5|A|1867
6MTB|1|5|A|1868
6MTB|1|5|G|1869
6MTB|1|5|C|1870

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10