HL_6MTB_078

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

6MTB|1|5|A|4910, 6MTB|1|5|A|4911, 6MTB|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_078 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1731

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6MTB|1|5|C|4906
6MTB|1|5|G|4907
6MTB|1|5|G|4908
6MTB|1|5|A|4909
6MTB|1|5|A|4910
6MTB|1|5|A|4911
6MTB|1|5|G|4912
6MTB|1|5|G|4913
6MTB|1|5|G|4914
6MTB|1|5|G|4915

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L13a