HL_6MTB_093

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_093 not in the Motif Atlas

Geometric match to HL_5AXM_001

Geometric discrepancy: 0.3435

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6MTB|1|9|G|377
6MTB|1|9|U|378
6MTB|1|9|C|379
6MTB|1|9|G|380
6MTB|1|9|C|381
6MTB|1|9|C|382
6MTB|1|9|G|383
6MTB|1|9|U|384
6MTB|1|9|G|385
6MTB|1|9|C|386
6MTB|1|9|C|387

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain LL

40S ribosomal protein S11