HL_6MTB_103

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

6MTB|1|9|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_103 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.1984

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6MTB|1|9|C|884
6MTB|1|9|U|885
6MTB|1|9|A|886
6MTB|1|9|U|887
6MTB|1|9|U|888
6MTB|1|9|U|889
6MTB|1|9|U|890
6MTB|1|9|G|891
6MTB|1|9|U|892
6MTB|1|9|U|893
6MTB|1|9|G|894
6MTB|1|9|G|895
6MTB|1|9|U|896
6MTB|1|9|U|897
6MTB|1|9|U|898
6MTB|1|9|U|899
6MTB|1|9|C|900
6MTB|1|9|G|901
6MTB|1|9|G|902

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain LL

40S ribosomal protein S11