HL_6MTB_105

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_105 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0844

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTB|1|9|C|994
6MTB|1|9|G|995
6MTB|1|9|A|996
6MTB|1|9|A|997
6MTB|1|9|A|998
6MTB|1|9|G|999

Current chains

Chain 9

18S rRNA

Nearby chains

Chain NN

40S ribosomal protein S13

Chain aa

40S ribosomal protein S26