HL_6MTC_029

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6MTC|1|5|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_029 not in the Motif Atlas

Geometric match to HL_7A0S_005

Geometric discrepancy: 0.3324

The information below is about HL_7A0S_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6MTC|1|5|C|1763
6MTC|1|5|G|1764
6MTC|1|5|A|1765
6MTC|1|5|A|1766
6MTC|1|5|A|1767
6MTC|1|5|C|1768
6MTC|1|5|G|1769

Current chains

Chain 5

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L11

Chain PP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18