HL_6MTC_031

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG(UR3)AAGC

Length

7 nucleotides

Bulged bases

6MTC|1|5|G|1869

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_031 not in the Motif Atlas

Geometric match to HL_5TBW_025

Geometric discrepancy: 0.0813

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTC|1|5|G|1864
6MTC|1|5|G|1865
6MTC|1|5|UR3|1866
6MTC|1|5|A|1867
6MTC|1|5|A|1868
6MTC|1|5|G|1869
6MTC|1|5|C|1870

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10