HL_6MTC_036

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_036 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.0985

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTC|1|5|C|2317
6MTC|1|5|G|2318
6MTC|1|5|C|2319
6MTC|1|5|G|2320
6MTC|1|5|G|2321
6MTC|1|5|G|2322

Current chains

Chain 5

28S rRNA

Nearby chains

Chain e

60S ribosomal protein L32

Chain r

60S ribosomal protein L28