HL_6MTC_060
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- C(I4U)G(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6MTC|1|5|G|4195
- QA status
- Modified nucleotides: I4U, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTC_060 not in the Motif Atlas
- Homologous match to HL_8P9A_165
- Geometric discrepancy: 0.1073
- The information below is about HL_8P9A_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6MTC|1|5|C|4193
6MTC|1|5|I4U|4194
6MTC|1|5|G|4195
6MTC|1|5|OMG|4196
6MTC|1|5|G|4197
6MTC|1|5|G|4198
6MTC|1|5|C|4199
6MTC|1|5|G|4200
6MTC|1|5|G|4201
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain b
- 60S ribosomal protein L29
- Chain v
- Interferon-related developmental regulator 2
Coloring options: