HL_6MTC_062

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_062 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1732

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6MTC|1|5|G|4250
6MTC|1|5|A|4251
6MTC|1|5|C|4252
6MTC|1|5|A|4253
6MTC|1|5|G|4254
6MTC|1|5|A|4255
6MTC|1|5|A|4256
6MTC|1|5|A|4257
6MTC|1|5|C|4258

Current chains

Chain 5

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L11