HL_6MTC_069

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUG(PSU)UCA

Length

7 nucleotides

Bulged bases

6MTC|1|5|G|4499

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_069 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.2944

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6MTC|1|5|U|4497
6MTC|1|5|U|4498
6MTC|1|5|G|4499
6MTC|1|5|PSU|4500
6MTC|1|5|U|4501
6MTC|1|5|C|4502
6MTC|1|5|A|4503

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3