HL_6MTC_075

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

6MTC|1|5|A|4910, 6MTC|1|5|A|4911, 6MTC|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_075 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.0874

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6MTC|1|5|C|4906
6MTC|1|5|G|4907
6MTC|1|5|G|4908
6MTC|1|5|A|4909
6MTC|1|5|A|4910
6MTC|1|5|A|4911
6MTC|1|5|G|4912
6MTC|1|5|G|4913
6MTC|1|5|G|4914
6MTC|1|5|G|4915

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L13a