HL_6MTC_076

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6MTC|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_076 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.115

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6MTC|1|5|G|4975
6MTC|1|5|U|4976
6MTC|1|5|A|4977
6MTC|1|5|G|4978
6MTC|1|5|A|4979
6MTC|1|5|C|4980
6MTC|1|5|G|4981
6MTC|1|5|A|4982
6MTC|1|5|C|4983

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain d

60S ribosomal protein L31