HL_6MTC_096

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_096 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1591

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6MTC|1|9|A|569
6MTC|1|9|C|570
6MTC|1|9|U|571
6MTC|1|9|U|572
6MTC|1|9|U|573
6MTC|1|9|A|574
6MTC|1|9|A|575
6MTC|1|9|A|576
6MTC|1|9|U|577
6MTC|1|9|C|578
6MTC|1|9|C|579
6MTC|1|9|U|580
6MTC|1|9|U|581

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24