HL_6MTC_112

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_112 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3084

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6MTC|1|9|C|1460
6MTC|1|9|G|1461
6MTC|1|9|U|1462
6MTC|1|9|U|1463
6MTC|1|9|C|1464
6MTC|1|9|A|1465
6MTC|1|9|G|1466

Current chains

Chain 9

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S17

Chain gg

Receptor of activated protein C kinase 1