HL_6MTC_123
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGAAA(PSU)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTC_123 not in the Motif Atlas
- Homologous match to HL_8P9A_159
- Geometric discrepancy: 0.2657
- The information below is about HL_8P9A_159
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
6MTC|1|5|A|3724
6MTC|1|5|G|3725
6MTC|1|5|A|3726
6MTC|1|5|A|3727
6MTC|1|5|A|3728
6MTC|1|5|PSU|3729
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain i
- 60S ribosomal protein L36
- Chain o
- 60S ribosomal protein L36a
- Chain u
- 60S ribosomal protein L10a
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