HL_6MTD_005

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6MTD|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3456

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6MTD|1|5|U|204
6MTD|1|5|C|205
6MTD|1|5|U|206
6MTD|1|5|G|207
6MTD|1|5|A|208
6MTD|1|5|U|209
6MTD|1|5|C|210
6MTD|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Y

uL24

Chain e

eL32