HL_6MTD_017

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_017 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0873

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTD|1|5|U|1389
6MTD|1|5|G|1390
6MTD|1|5|A|1391
6MTD|1|5|A|1392
6MTD|1|5|G|1393
6MTD|1|5|G|1394

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain Q

eL18

Chain a

uL15

Chain i

eL36