HL_6MTD_025

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6MTD|1|5|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_025 not in the Motif Atlas

Geometric match to HL_7A0S_005

Geometric discrepancy: 0.2933

The information below is about HL_7A0S_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6MTD|1|5|C|1763
6MTD|1|5|G|1764
6MTD|1|5|A|1765
6MTD|1|5|A|1766
6MTD|1|5|A|1767
6MTD|1|5|C|1768
6MTD|1|5|G|1769

Current chains

Chain 5

28S rRNA

Nearby chains

Chain J

uL5

Chain PP

uS19