HL_6MTD_027

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG(UR3)AAGC

Length

7 nucleotides

Bulged bases

6MTD|1|5|G|1869

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_027 not in the Motif Atlas

Geometric match to HL_5TBW_025

Geometric discrepancy: 0.0937

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTD|1|5|G|1864
6MTD|1|5|G|1865
6MTD|1|5|UR3|1866
6MTD|1|5|A|1867
6MTD|1|5|A|1868
6MTD|1|5|G|1869
6MTD|1|5|C|1870

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16