HL_6MTD_037

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6MTD|1|5|U|2530, 6MTD|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_037 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1212

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|G|2523
6MTD|1|5|U|2524
6MTD|1|5|U|2525
6MTD|1|5|C|2526
6MTD|1|5|A|2527
6MTD|1|5|G|2528
6MTD|1|5|A|2529
6MTD|1|5|U|2530
6MTD|1|5|C|2531
6MTD|1|5|C|2532

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34