HL_6MTD_051

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(A2M)AGAAA(PSU)UC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_051 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3463

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6MTD|1|5|G|3722
6MTD|1|5|A2M|3723
6MTD|1|5|A|3724
6MTD|1|5|G|3725
6MTD|1|5|A|3726
6MTD|1|5|A|3727
6MTD|1|5|A|3728
6MTD|1|5|PSU|3729
6MTD|1|5|U|3730
6MTD|1|5|C|3731

Current chains

Chain 5

28S rRNA

Nearby chains

Chain i

eL36

Chain o

eL42

Chain u

uL1