HL_6MTD_054

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

6MTD|1|5|A|3876, 6MTD|1|5|A|3877, 6MTD|1|5|C|3878, 6MTD|1|5|G|3881

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_054 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0874

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|G|3873
6MTD|1|5|G|3874
6MTD|1|5|G|3875
6MTD|1|5|A|3876
6MTD|1|5|A|3877
6MTD|1|5|C|3878
6MTD|1|5|G|3879
6MTD|1|5|P7G|3880
6MTD|1|5|G|3881
6MTD|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32