HL_6MTD_057

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6MTD|1|5|G|4195

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_057 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.1215

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6MTD|1|5|C|4193
6MTD|1|5|I4U|4194
6MTD|1|5|G|4195
6MTD|1|5|OMG|4196
6MTD|1|5|G|4197
6MTD|1|5|G|4198
6MTD|1|5|C|4199
6MTD|1|5|G|4200
6MTD|1|5|G|4201

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain b

eL29