HL_6MTD_059

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_059 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1779

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6MTD|1|5|G|4250
6MTD|1|5|A|4251
6MTD|1|5|C|4252
6MTD|1|5|A|4253
6MTD|1|5|G|4254
6MTD|1|5|A|4255
6MTD|1|5|A|4256
6MTD|1|5|A|4257
6MTD|1|5|C|4258

Current chains

Chain 5

28S rRNA

Nearby chains

Chain J

uL5