HL_6MTD_060

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_060 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1091

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6MTD|1|5|C|4270
6MTD|1|5|A|4271
6MTD|1|5|G|4272
6MTD|1|5|A|4273
6MTD|1|5|A|4274
6MTD|1|5|G|4275
6MTD|1|5|G|4276
6MTD|1|5|G|4277

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain T

eL21