HL_6MTD_066

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUG(PSU)UCA

Length

7 nucleotides

Bulged bases

6MTD|1|5|G|4499

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_066 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.3206

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6MTD|1|5|U|4497
6MTD|1|5|U|4498
6MTD|1|5|G|4499
6MTD|1|5|PSU|4500
6MTD|1|5|U|4501
6MTD|1|5|C|4502
6MTD|1|5|A|4503

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3