HL_6MTD_072

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

6MTD|1|5|A|4910, 6MTD|1|5|A|4911, 6MTD|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_072 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1575

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|C|4906
6MTD|1|5|G|4907
6MTD|1|5|G|4908
6MTD|1|5|A|4909
6MTD|1|5|A|4910
6MTD|1|5|A|4911
6MTD|1|5|G|4912
6MTD|1|5|G|4913
6MTD|1|5|G|4914
6MTD|1|5|G|4915

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13