HL_6MTD_093

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_093 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1475

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6MTD|1|9|A|569
6MTD|1|9|C|570
6MTD|1|9|U|571
6MTD|1|9|U|572
6MTD|1|9|U|573
6MTD|1|9|A|574
6MTD|1|9|A|575
6MTD|1|9|A|576
6MTD|1|9|U|577
6MTD|1|9|C|578
6MTD|1|9|C|579
6MTD|1|9|U|580
6MTD|1|9|U|581

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24