HL_6MTD_112

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

6MTD|1|9|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_112 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.315

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6MTD|1|9|G|1658
6MTD|1|9|U|1659
6MTD|1|9|C|1660
6MTD|1|9|A|1661
6MTD|1|9|U|1662
6MTD|1|9|A|1663
6MTD|1|9|A|1664
6MTD|1|9|G|1665
6MTD|1|9|C|1666

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

uS9

Chain TT

eS19

Chain UU

uS10

Chain dd

uS14