HL_6MTE_010

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGUAA(OMG)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_010 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3649

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6MTE|1|5|C|367
6MTE|1|5|C|368
6MTE|1|5|G|369
6MTE|1|5|U|370
6MTE|1|5|A|371
6MTE|1|5|A|372
6MTE|1|5|OMG|373
6MTE|1|5|G|374

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain j

eL37

Chain l

eL39